The headlight doors are powered by several fuse links and the "Tail Fuse" 20A fuse. The Fusible links are: Fusible Link B - powers the Isolation relay; Fusible Link C - powers the LH headlight door motor and Fusible Link D - powers the RH headlight door motor.
Fusible Link Locations:
Fusible Link B - RH front of engine compartment, at battery junction block
Fusible Link C - In front lights harness, to the right of the brake master cylinder
Fusible Link D - In front lights harness, to the right of the brake master cylinder
86 Gt Fuse Block:

Isolation Relay location:

Headlight Doors wiring diagram:

Hope this information is of some value and help in sorting your headlight door issues.
The information was pulled from the 1986 PONTIAC Fiero Service Manual
[This message has been edited by Cajun (edited 07-11-2017).]