There is more to plugging the holes, if you go that direction. You also have to remove the "front Cover" and grind a flow passage ( since you have now blocked it off).
Couldn't find the thread that has pictures of this mod in the LIM Cover, but here's a short blurp from another thread
"The coolant passages to the throttle body keep the body from icing in extremely cold weather. They also flow coolant to the rear head. Granted it is a small amount of coolant but it is still engine coolant. I run them blocked but opened the cover on the lim under the throttle body and channeled it so coolant could flow to the rear head."
Basically you are blocking some flow through the head by blocking off those two ports, and "opening up" the front cover allows that flow to be restored.
BTW, 1/4-20 NPT allen head plugs will also work. Tap the LIM and use some thread sealant on the plugs. If you can find aluminum plugs, even better. Summit racing has them.
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'87 GT in process, including GA / Seville brakes, Poly Suspension, '95 3800 Series 1 SC ( 225 hp ) T460e.