3800 engines are externally balanced. There is a counterweight on the flexplate/flywheel and also in the harmonic balancer. 3800 Series 2 and 3 SC (L67/L32) engines have MORE external counterweight amount than the N/A versions of these engines. Since the 3800 Series 2 N/A engine was the ONLY engine to ever be used with a manual trans (in a Camaro/Firebird application), that flywheel is going to be balanced for an N/A engine and not an SC engine.
A good machine shop can balance match the new flywheel to match the same amount of counter-balance as the stock flexplate (that came off the SC engine) had. Even though a balance-match job is not as good as a full engine balance, it should work just fine and be better than just slapping an "un balance-matched" flywheel onto the engine.
I've been told the amount of counterweight difference between N/A and SC engines is some 40 grams. Some people have just done the manual trans swap without having the new flywheel balance-matched to the stock SC flexplate and reported that they didn't feel huge vibrations. But even a minor imbalance can impact engine bearing life.
-ryan
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