| quote | Originally posted by Dementia: OK so the ignition senses the the right key not the pcm? |
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No...the passkey module senses the "correct" key, the column connects the key to the passkey module, the output of the module connects to the ECM. Correct key = passkey module to turn on the signal that tells the ECM it's ok to start.
| quote | Originally posted by Dementia: So if I unhook the harness that runs up the column and hook the 3800 harness up to that column it should run? |
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No, you need to connect the output of the passkey module to the passkey input of the ECM. This will only work if the key you are using matches the module (ie: keep the original column and passkey module and just swap the ECM and make the appropriate connections) - this 'assumes' you are using the same systems: passkey 1 is different from passkey 2 and they are both different from passkey 3, etc.
I am not sure if I am being clear, but we are talking about 3 separte items here: the key, the passkey module and the pcm. The key is in the column, the passkey module is usually under the dash passenger side and the pcm is in the engine bay.
Here is the 94 diagram:

Technically you can connect the A3 output from the passkey module to the 98's PCM pin C1/70 -
however, I can not say if the 2 systems are compatiable. ie: if they are both passkey 2 systems, as the wiring diagram for the anti theft is a bit more complicated on the 98 (see diagram below) and it
might be the passkey 3 system. In which case you will have to move the 98's key/cylinder and BCM over to the 94 and figure out how to wire it in - be easier to use a bypass module or have it programmed out of the PCM.
Here is the 98 wiring diagram:

Key lower left corner, connects to the body control module (passkey module) pins C2 and D7, the module then connects from D8 to the PCM C1/70 (for the 3.8)