It would help if you pick a transmission...
One of the primary reasons people pick the F23 is because stock Fiero axles are used with it. No need to mess with a jackshaft, so most don't use one. I don't know of anyone who has installed an F23 with a jackshaft, so you will likely need to R&D this one if you want to use it.
The F40 and F35 can both use the Cobalt SS (supercharged version, not the turbo version) axles and intermediate shaft when installed in a fiero. The F35 would place the engine in the approximate stock location, the F40 would shift it 1" to the passenger side (which there might not be room for - like many of the V8's).
For the F23 or F35, you can use any shifter you want as the reverse lockout is part of the transmission. On the F40, its not part of the transmission and the Fiero 4 speed shifter is needed since it has the reverse lockout built into it.
[This message has been edited by fieroguru (edited 03-20-2014).]